How To Install libchado-perl on Debian 11
Introduction
In this tutorial we learn how to install libchado-perl on Debian 11.
What is libchado-perl
libchado-perl is:
Chado is a relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny. It has been designed to handle complex representations of biological knowledge and should be considered one of the most sophisticated relational schemas currently available in molecular biology. The price of this capability is that the new user must spend some time becoming familiar with its fundamentals.
There are three methods to install libchado-perl on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install libchado-perl Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install libchado-perl using apt-get by running the following command:
sudo apt-get -y install libchado-perl
Install libchado-perl Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install libchado-perl using apt by running the following command:
sudo apt -y install libchado-perl
Install libchado-perl Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install libchado-perl using aptitude by running the following command:
sudo aptitude -y install libchado-perl
How To Uninstall libchado-perl on Debian 11
To uninstall only the libchado-perl package we can use the following command:
sudo apt-get remove libchado-perl
Uninstall libchado-perl And Its Dependencies
To uninstall libchado-perl and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove libchado-perl
Remove libchado-perl Configurations and Data
To remove libchado-perl configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge libchado-perl
Remove libchado-perl configuration, data, and all of its dependencies
We can use the following command to remove libchado-perl configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge libchado-perl
Dependencies
libchado-perl have the following dependencies:
- perl
- postgresql-client
- libbio-chado-schema-perl
- libclass-dbi-pg-perl
- libxml-libxslt-perl
- liblog-log4perl-perl
- bioperl
- libgo-perl
- libdbd-pg-perl
- libdbi-perl
- libgd-gd2-perl
- libdigest-md5-file-perl
- libgraph-perl
- libdata-stag-perl
- libxml-perl
- libclass-dbi-perl
- libclass-dbi-pager-perl
- libxml-simple-perl
- libwww-perl
- libtemplate-perl
- libcgi-session-perl
- libsql-translator-perl
- libdbix-dbstag-perl
- libmodule-build-perl
- make
References
Summary
In this tutorial we learn how to install libchado-perl package on Debian 11 using different package management tools: apt, apt-get and aptitude.
