How To Install lamassemble on Debian 12
Introduction
In this tutorial we learn how to install lamassemble on Debian 12.
What is lamassemble
lamassemble is:
lamassemble merges overlapping “long” DNA reads into a consensus sequence (i.e. assembles them). It works OK when the number of reads is less than a thousand or so. The merging is not always accurate. In particular, if the reads come from huge tandem repeats, wrong parts of the reads may get merged.
There are three methods to install lamassemble on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install lamassemble Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install lamassemble using apt-get by running the following command:
sudo apt-get -y install lamassemble
Install lamassemble Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install lamassemble using apt by running the following command:
sudo apt -y install lamassemble
Install lamassemble Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install lamassemble using aptitude by running the following command:
sudo aptitude -y install lamassemble
How To Uninstall lamassemble on Debian 12
To uninstall only the lamassemble package we can use the following command:
sudo apt-get remove lamassemble
Uninstall lamassemble And Its Dependencies
To uninstall lamassemble and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove lamassemble
Remove lamassemble Configurations and Data
To remove lamassemble configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge lamassemble
Remove lamassemble configuration, data, and all of its dependencies
We can use the following command to remove lamassemble configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge lamassemble
Dependencies
lamassemble have the following dependencies:
References
Summary
In this tutorial we learn how to install lamassemble package on Debian 12 using different package management tools: apt, apt-get and aptitude.
