How To Install kmer-examples on Ubuntu 22.04
Introduction
In this tutorial we learn how to install kmer-examples
on Ubuntu 22.04.
What is kmer-examples
kmer-examples is:
The kmer package is a suite of tools for DNA sequence analysis. It provides tools for searching (ESTs, mRNAs, sequencing reads); aligning (ESTs, mRNAs, whole genomes); and a variety of analyses based on kmers.
This package contains a test data set as well as sample scripts running some test suite provided by Debian also as autopkgtest.
There are three methods to install kmer-examples
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install kmer-examples Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install kmer-examples
using apt-get
by running the following command:
sudo apt-get -y install kmer-examples
Install kmer-examples Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install kmer-examples
using apt
by running the following command:
sudo apt -y install kmer-examples
Install kmer-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install kmer-examples
using aptitude
by running the following command:
sudo aptitude -y install kmer-examples
How To Uninstall kmer-examples on Ubuntu 22.04
To uninstall only the kmer-examples
package we can use the following command:
sudo apt-get remove kmer-examples
Uninstall kmer-examples And Its Dependencies
To uninstall kmer-examples
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove kmer-examples
Remove kmer-examples Configurations and Data
To remove kmer-examples
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge kmer-examples
Remove kmer-examples configuration, data, and all of its dependencies
We can use the following command to remove kmer-examples
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge kmer-examples
References
Summary
In this tutorial we learn how to install kmer-examples
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.