How To Install genomethreader on Ubuntu 22.04
Introduction
In this tutorial we learn how to install genomethreader
on Ubuntu 22.04.
What is genomethreader
genomethreader is:
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments. GenomeThreader was motivated by disabling limitations in GeneSeqer, a popular gene prediction program which is widely used for plant genome annotation.
There are three methods to install genomethreader
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install genomethreader Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install genomethreader
using apt-get
by running the following command:
sudo apt-get -y install genomethreader
Install genomethreader Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install genomethreader
using apt
by running the following command:
sudo apt -y install genomethreader
Install genomethreader Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install genomethreader
using aptitude
by running the following command:
sudo aptitude -y install genomethreader
How To Uninstall genomethreader on Ubuntu 22.04
To uninstall only the genomethreader
package we can use the following command:
sudo apt-get remove genomethreader
Uninstall genomethreader And Its Dependencies
To uninstall genomethreader
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove genomethreader
Remove genomethreader Configurations and Data
To remove genomethreader
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge genomethreader
Remove genomethreader configuration, data, and all of its dependencies
We can use the following command to remove genomethreader
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge genomethreader
References
Summary
In this tutorial we learn how to install genomethreader
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.