How To Install biosquid on Debian 9
Introduction
In this tutorial we learn how to install biosquid
on Debian 9.
What is biosquid
biosquid is:
SQUID is a library of C code functions for sequence analysis. It also includes a number of small utility programs to convert, show statistics, manipulate and do other functions on sequence files.
The original name of the package is “squid”, but since there is already a squid on the archive (a proxy cache), it was renamed to “biosquid”.
This package contains some tools to demonstrate the features of the SQUID library.
There are three methods to install biosquid
on Debian 9. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install biosquid Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install biosquid
using apt-get
by running the following command:
sudo apt-get -y install biosquid
Install biosquid Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install biosquid
using apt
by running the following command:
sudo apt -y install biosquid
Install biosquid Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install biosquid
using aptitude
by running the following command:
sudo aptitude -y install biosquid
How To Uninstall biosquid on Debian 9
To uninstall only the biosquid
package we can use the following command:
sudo apt-get remove biosquid
Uninstall biosquid And Its Dependencies
To uninstall biosquid
and its dependencies that are no longer needed by Debian 9, we can use the command below:
sudo apt-get -y autoremove biosquid
Remove biosquid Configurations and Data
To remove biosquid
configuration and data from Debian 9 we can use the following command:
sudo apt-get -y purge biosquid
Remove biosquid configuration, data, and all of its dependencies
We can use the following command to remove biosquid
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge biosquid
Dependencies
biosquid have the following dependencies:
References
Summary
In this tutorial we learn how to install biosquid
package on Debian 9 using different package management tools: apt
, apt-get
and aptitude
.