How To Install catfishq on Ubuntu 22.04
Introduction
In this tutorial we learn how to install catfishq
on Ubuntu 22.04.
What is catfishq
catfishq is:
FASTQ is the most common format to store the reads from high-throughput biological sequencing. This tool takes paths to an arbritary number of zipped and unzipped FASTQ files and/or folders containing zipped or unzipped FASTQ files, concatenates them and prints them to standard out (default) or an unzipped output file.
Supported file extensions are: ‘.fastq’, ‘.fastq.gz’, ‘.fasta’, ‘.fasta.gz’, ‘.fa’, ‘.fa.gz’, ‘.fq’, ‘.fq.gz’
There are three methods to install catfishq
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install catfishq Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install catfishq
using apt-get
by running the following command:
sudo apt-get -y install catfishq
Install catfishq Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install catfishq
using apt
by running the following command:
sudo apt -y install catfishq
Install catfishq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install catfishq
using aptitude
by running the following command:
sudo aptitude -y install catfishq
How To Uninstall catfishq on Ubuntu 22.04
To uninstall only the catfishq
package we can use the following command:
sudo apt-get remove catfishq
Uninstall catfishq And Its Dependencies
To uninstall catfishq
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove catfishq
Remove catfishq Configurations and Data
To remove catfishq
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge catfishq
Remove catfishq configuration, data, and all of its dependencies
We can use the following command to remove catfishq
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge catfishq
References
Summary
In this tutorial we learn how to install catfishq
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.