How To Install biosyntax-gedit on Ubuntu 22.04
Introduction
In this tutorial we learn how to install biosyntax-gedit
on Ubuntu 22.04.
What is biosyntax-gedit
biosyntax-gedit is:
Syntax highlighting for computational biology to bring you intuitively close to your data. BioSyntax supports .sam, .flagstat, .vcf, .fasta, .fastq, .faidx , .clustal, .pdb, .gtf, .bed files & more.
This package provides the bioSyntax plugin for gedit.
Please note: The plugin is not enabled per default, to enable it, please read: /usr/share/doc/biosyntax-gedit/README.Debian
There are three methods to install biosyntax-gedit
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install biosyntax-gedit Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install biosyntax-gedit
using apt-get
by running the following command:
sudo apt-get -y install biosyntax-gedit
Install biosyntax-gedit Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install biosyntax-gedit
using apt
by running the following command:
sudo apt -y install biosyntax-gedit
Install biosyntax-gedit Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install biosyntax-gedit
using aptitude
by running the following command:
sudo aptitude -y install biosyntax-gedit
How To Uninstall biosyntax-gedit on Ubuntu 22.04
To uninstall only the biosyntax-gedit
package we can use the following command:
sudo apt-get remove biosyntax-gedit
Uninstall biosyntax-gedit And Its Dependencies
To uninstall biosyntax-gedit
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove biosyntax-gedit
Remove biosyntax-gedit Configurations and Data
To remove biosyntax-gedit
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge biosyntax-gedit
Remove biosyntax-gedit configuration, data, and all of its dependencies
We can use the following command to remove biosyntax-gedit
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge biosyntax-gedit
References
Summary
In this tutorial we learn how to install biosyntax-gedit
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.