How To Install fastahack on Ubuntu 22.04
Introduction
In this tutorial we learn how to install fastahack
on Ubuntu 22.04.
What is fastahack
fastahack is:
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
- FASTA index (.fai) generation for FASTA files
- Sequence extraction
- Subsequence extraction
- Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
There are three methods to install fastahack
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install fastahack Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install fastahack
using apt-get
by running the following command:
sudo apt-get -y install fastahack
Install fastahack Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install fastahack
using apt
by running the following command:
sudo apt -y install fastahack
Install fastahack Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install fastahack
using aptitude
by running the following command:
sudo aptitude -y install fastahack
How To Uninstall fastahack on Ubuntu 22.04
To uninstall only the fastahack
package we can use the following command:
sudo apt-get remove fastahack
Uninstall fastahack And Its Dependencies
To uninstall fastahack
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove fastahack
Remove fastahack Configurations and Data
To remove fastahack
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge fastahack
Remove fastahack configuration, data, and all of its dependencies
We can use the following command to remove fastahack
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge fastahack
References
Summary
In this tutorial we learn how to install fastahack
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.