How To Install pizzly on Ubuntu 22.04
Introduction
In this tutorial we learn how to install pizzly
on Ubuntu 22.04.
What is pizzly
pizzly is:
For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.
Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.
There are three methods to install pizzly
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install pizzly Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install pizzly
using apt-get
by running the following command:
sudo apt-get -y install pizzly
Install pizzly Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install pizzly
using apt
by running the following command:
sudo apt -y install pizzly
Install pizzly Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install pizzly
using aptitude
by running the following command:
sudo aptitude -y install pizzly
How To Uninstall pizzly on Ubuntu 22.04
To uninstall only the pizzly
package we can use the following command:
sudo apt-get remove pizzly
Uninstall pizzly And Its Dependencies
To uninstall pizzly
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove pizzly
Remove pizzly Configurations and Data
To remove pizzly
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge pizzly
Remove pizzly configuration, data, and all of its dependencies
We can use the following command to remove pizzly
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge pizzly
References
Summary
In this tutorial we learn how to install pizzly
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.