How To Install phyutility on Ubuntu 22.04
Introduction
In this tutorial we learn how to install phyutility
on Ubuntu 22.04.
What is phyutility
phyutility is:
Phyutility (fyoo-til-i-te) is a command line program that performs simple analyses or modifications on both trees and data matrices.
Currently it performs the following functions (to suggest another feature, submit an Issue and use the label Type-Enhancement) :
Trees
- rerooting
- pruning
- type conversion
- consensus
- leaf stability
- lineage movement
- tree support
Data Matrices
- concatenate alignments
- genbank parsing
- trimming alignments
- search NCBI
- fetch NCBI
There are three methods to install phyutility
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install phyutility Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install phyutility
using apt-get
by running the following command:
sudo apt-get -y install phyutility
Install phyutility Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install phyutility
using apt
by running the following command:
sudo apt -y install phyutility
Install phyutility Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install phyutility
using aptitude
by running the following command:
sudo aptitude -y install phyutility
How To Uninstall phyutility on Ubuntu 22.04
To uninstall only the phyutility
package we can use the following command:
sudo apt-get remove phyutility
Uninstall phyutility And Its Dependencies
To uninstall phyutility
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove phyutility
Remove phyutility Configurations and Data
To remove phyutility
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge phyutility
Remove phyutility configuration, data, and all of its dependencies
We can use the following command to remove phyutility
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge phyutility
References
Summary
In this tutorial we learn how to install phyutility
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.