How To Install phipack on Ubuntu 22.04
Introduction
In this tutorial we learn how to install phipack on Ubuntu 22.04.
What is phipack
phipack is:
The PhiPack software package implements a few tests for recombination and can produce refined incompatibility matrices as well. Specifically, PHIPack implements the ‘Pairwise Homoplasy Index’, Maximum Chi2 and the ‘Neighbour Similarity Score’. The program Phi can be run to produce a p-value of recombination within a data set and the program profile can be run to determine regions exhibiting strongest evidence mosaicism.
There are three methods to install phipack on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install phipack Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install phipack using apt-get by running the following command:
sudo apt-get -y install phipack
Install phipack Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install phipack using apt by running the following command:
sudo apt -y install phipack
Install phipack Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install phipack using aptitude by running the following command:
sudo aptitude -y install phipack
How To Uninstall phipack on Ubuntu 22.04
To uninstall only the phipack package we can use the following command:
sudo apt-get remove phipack
Uninstall phipack And Its Dependencies
To uninstall phipack and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove phipack
Remove phipack Configurations and Data
To remove phipack configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge phipack
Remove phipack configuration, data, and all of its dependencies
We can use the following command to remove phipack configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge phipack
References
Summary
In this tutorial we learn how to install phipack package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
