How To Install pbjelly on Ubuntu 22.04
Introduction
In this tutorial we learn how to install pbjelly on Ubuntu 22.04.
What is pbjelly
pbjelly is:
PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes.
PBJelly is part of the PBSuite.
There are three methods to install pbjelly on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install pbjelly Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install pbjelly using apt-get by running the following command:
sudo apt-get -y install pbjelly
Install pbjelly Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install pbjelly using apt by running the following command:
sudo apt -y install pbjelly
Install pbjelly Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install pbjelly using aptitude by running the following command:
sudo aptitude -y install pbjelly
How To Uninstall pbjelly on Ubuntu 22.04
To uninstall only the pbjelly package we can use the following command:
sudo apt-get remove pbjelly
Uninstall pbjelly And Its Dependencies
To uninstall pbjelly and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove pbjelly
Remove pbjelly Configurations and Data
To remove pbjelly configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge pbjelly
Remove pbjelly configuration, data, and all of its dependencies
We can use the following command to remove pbjelly configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge pbjelly
References
Summary
In this tutorial we learn how to install pbjelly package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
