How To Install patman on Ubuntu 22.04
Introduction
In this tutorial we learn how to install patman
on Ubuntu 22.04.
What is patman
patman is:
Patman searches for short patterns in large DNA databases, allowing for approximate matches. It is optimized for searching for many small pattern at the same time, for example microarray probes.
There are three methods to install patman
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install patman Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install patman
using apt-get
by running the following command:
sudo apt-get -y install patman
Install patman Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install patman
using apt
by running the following command:
sudo apt -y install patman
Install patman Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install patman
using aptitude
by running the following command:
sudo aptitude -y install patman
How To Uninstall patman on Ubuntu 22.04
To uninstall only the patman
package we can use the following command:
sudo apt-get remove patman
Uninstall patman And Its Dependencies
To uninstall patman
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove patman
Remove patman Configurations and Data
To remove patman
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge patman
Remove patman configuration, data, and all of its dependencies
We can use the following command to remove patman
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge patman
References
Summary
In this tutorial we learn how to install patman
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.