How To Install lamarc on Ubuntu 22.04
Introduction
In this tutorial we learn how to install lamarc
on Ubuntu 22.04.
What is lamarc
lamarc is:
LAMARC is a program which estimates population-genetic parameters such as population size, population growth rate, recombination rate, and migration rates. It approximates a summation over all possible genealogies that could explain the observed sample, which may be sequence, SNP, microsatellite, or electrophoretic data. LAMARC and its sister program Migrate are successor programs to the older programs Coalesce, Fluctuate, and Recombine, which are no longer being supported. The programs are memory-intensive but can run effectively on workstations.
There are three methods to install lamarc
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install lamarc Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install lamarc
using apt-get
by running the following command:
sudo apt-get -y install lamarc
Install lamarc Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install lamarc
using apt
by running the following command:
sudo apt -y install lamarc
Install lamarc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install lamarc
using aptitude
by running the following command:
sudo aptitude -y install lamarc
How To Uninstall lamarc on Ubuntu 22.04
To uninstall only the lamarc
package we can use the following command:
sudo apt-get remove lamarc
Uninstall lamarc And Its Dependencies
To uninstall lamarc
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove lamarc
Remove lamarc Configurations and Data
To remove lamarc
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge lamarc
Remove lamarc configuration, data, and all of its dependencies
We can use the following command to remove lamarc
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge lamarc
References
Summary
In this tutorial we learn how to install lamarc
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.