How To Install kmerresistance on Ubuntu 22.04
Introduction
In this tutorial we learn how to install kmerresistance on Ubuntu 22.04.
What is kmerresistance
kmerresistance is:
KmerResistance correlates mapped genes with the predicted species of WGS samples, where this allows for identification of genes in samples which have been poorly sequenced or high accuracy predictions for samples with contamination. KmerResistance has one dependency, namely KMA to perform the mapping, which is also freely available.
There are three methods to install kmerresistance on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install kmerresistance Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install kmerresistance using apt-get by running the following command:
sudo apt-get -y install kmerresistance
Install kmerresistance Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install kmerresistance using apt by running the following command:
sudo apt -y install kmerresistance
Install kmerresistance Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install kmerresistance using aptitude by running the following command:
sudo aptitude -y install kmerresistance
How To Uninstall kmerresistance on Ubuntu 22.04
To uninstall only the kmerresistance package we can use the following command:
sudo apt-get remove kmerresistance
Uninstall kmerresistance And Its Dependencies
To uninstall kmerresistance and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove kmerresistance
Remove kmerresistance Configurations and Data
To remove kmerresistance configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge kmerresistance
Remove kmerresistance configuration, data, and all of its dependencies
We can use the following command to remove kmerresistance configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge kmerresistance
References
Summary
In this tutorial we learn how to install kmerresistance package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
