How To Install deepnano on Ubuntu 20.04
Introduction
In this tutorial we learn how to install deepnano on Ubuntu 20.04.
What is deepnano
deepnano is:
DeepNano is alternative basecaller for Oxford Nanopore MinION reads based on deep recurrent neural networks.
Currently it works with SQK-MAP-006 and SQK-MAP-005 chemistry and as a postprocessor for Metrichor.
There are three methods to install deepnano on Ubuntu 20.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install deepnano Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install deepnano using apt-get by running the following command:
sudo apt-get -y install deepnano
Install deepnano Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install deepnano using apt by running the following command:
sudo apt -y install deepnano
Install deepnano Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install deepnano using aptitude by running the following command:
sudo aptitude -y install deepnano
How To Uninstall deepnano on Ubuntu 20.04
To uninstall only the deepnano package we can use the following command:
sudo apt-get remove deepnano
Uninstall deepnano And Its Dependencies
To uninstall deepnano and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove deepnano
Remove deepnano Configurations and Data
To remove deepnano configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge deepnano
Remove deepnano configuration, data, and all of its dependencies
We can use the following command to remove deepnano configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge deepnano
References
Summary
In this tutorial we learn how to install deepnano package on Ubuntu 20.04 using different package management tools: apt, apt-get and aptitude.
