How To Install deepnano-data on Ubuntu 18.04

In this tutorial we learn how to install deepnano-data on Ubuntu 18.04. deepnano-data is alternative basecaller for MinION reads of genomic sequences (data)

Introduction

In this tutorial we learn how to install deepnano-data on Ubuntu 18.04.

What is deepnano-data

deepnano-data is:

DeepNano is alternative basecaller for Oxford Nanopore MinION reads based on deep recurrent neural networks.

This package contains deepnanos test data.

There are three methods to install deepnano-data on Ubuntu 18.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install deepnano-data Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install deepnano-data using apt-get by running the following command:

sudo apt-get -y install deepnano-data

Install deepnano-data Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install deepnano-data using apt by running the following command:

sudo apt -y install deepnano-data

Install deepnano-data Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install deepnano-data using aptitude by running the following command:

sudo aptitude -y install deepnano-data

How To Uninstall deepnano-data on Ubuntu 18.04

To uninstall only the deepnano-data package we can use the following command:

sudo apt-get remove deepnano-data

Uninstall deepnano-data And Its Dependencies

To uninstall deepnano-data and its dependencies that are no longer needed by Ubuntu 18.04, we can use the command below:

sudo apt-get -y autoremove deepnano-data

Remove deepnano-data Configurations and Data

To remove deepnano-data configuration and data from Ubuntu 18.04 we can use the following command:

sudo apt-get -y purge deepnano-data

Remove deepnano-data configuration, data, and all of its dependencies

We can use the following command to remove deepnano-data configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge deepnano-data

References

Summary

In this tutorial we learn how to install deepnano-data package on Ubuntu 18.04 using different package management tools: apt, apt-get and aptitude.