How To Install beast-mcmc-doc on Ubuntu 18.04
Introduction
In this tutorial we learn how to install beast-mcmc-doc
on Ubuntu 18.04.
What is beast-mcmc-doc
beast-mcmc-doc is:
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. Included is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results.
This package contains the documentation.
There are three methods to install beast-mcmc-doc
on Ubuntu 18.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install beast-mcmc-doc Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install beast-mcmc-doc
using apt-get
by running the following command:
sudo apt-get -y install beast-mcmc-doc
Install beast-mcmc-doc Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install beast-mcmc-doc
using apt
by running the following command:
sudo apt -y install beast-mcmc-doc
Install beast-mcmc-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install beast-mcmc-doc
using aptitude
by running the following command:
sudo aptitude -y install beast-mcmc-doc
How To Uninstall beast-mcmc-doc on Ubuntu 18.04
To uninstall only the beast-mcmc-doc
package we can use the following command:
sudo apt-get remove beast-mcmc-doc
Uninstall beast-mcmc-doc And Its Dependencies
To uninstall beast-mcmc-doc
and its dependencies that are no longer needed by Ubuntu 18.04, we can use the command below:
sudo apt-get -y autoremove beast-mcmc-doc
Remove beast-mcmc-doc Configurations and Data
To remove beast-mcmc-doc
configuration and data from Ubuntu 18.04 we can use the following command:
sudo apt-get -y purge beast-mcmc-doc
Remove beast-mcmc-doc configuration, data, and all of its dependencies
We can use the following command to remove beast-mcmc-doc
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge beast-mcmc-doc
References
Summary
In this tutorial we learn how to install beast-mcmc-doc
package on Ubuntu 18.04 using different package management tools: apt
, apt-get
and aptitude
.