How To Install genomethreader on Kali Linux
Introduction
In this tutorial we learn how to install genomethreader on Kali Linux.
What is genomethreader
genomethreader is:
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments. GenomeThreader was motivated by disabling limitations in GeneSeqer, a popular gene prediction program which is widely used for plant genome annotation.
There are three methods to install genomethreader on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install genomethreader Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install genomethreader using apt-get by running the following command:
sudo apt-get -y install genomethreaderInstall genomethreader Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install genomethreader using apt by running the following command:
sudo apt -y install genomethreaderInstall genomethreader Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install genomethreader using aptitude by running the following command:
sudo aptitude -y install genomethreaderHow To Uninstall genomethreader on Kali Linux
To uninstall only the genomethreader package we can use the following command:
sudo apt-get remove genomethreaderUninstall genomethreader And Its Dependencies
To uninstall genomethreader and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove genomethreaderRemove genomethreader Configurations and Data
To remove genomethreader configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge genomethreaderRemove genomethreader configuration, data, and all of its dependencies
We can use the following command to remove genomethreader configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge genomethreaderDependencies
genomethreader have the following dependencies:
References
Summary
In this tutorial we learn how to install genomethreader package on Kali Linux using different package management tools: apt, apt-get and aptitude.
