How To Install changeo on Kali Linux
Introduction
In this tutorial we learn how to install changeo
on Kali Linux.
What is changeo
changeo is:
Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and reconstructing germline sequences.
Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of Ig repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. Change-O is a suite of utilities to facilitate advanced analysis of Ig and TCR sequences following germline segment assignment. Change-O handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of clustering methods for assigning clonal groups to Ig sequences. Record sorting, grouping, and various database manipulation operations are also included.
This package installs the library for Python 3.
There are three methods to install changeo
on Kali Linux. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install changeo Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install changeo
using apt-get
by running the following command:
sudo apt-get -y install changeo
Install changeo Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install changeo
using apt
by running the following command:
sudo apt -y install changeo
Install changeo Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install changeo
using aptitude
by running the following command:
sudo aptitude -y install changeo
How To Uninstall changeo on Kali Linux
To uninstall only the changeo
package we can use the following command:
sudo apt-get remove changeo
Uninstall changeo And Its Dependencies
To uninstall changeo
and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove changeo
Remove changeo Configurations and Data
To remove changeo
configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge changeo
Remove changeo configuration, data, and all of its dependencies
We can use the following command to remove changeo
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge changeo
Dependencies
changeo have the following dependencies:
- python3-airr
- python3-biopython
- python3-numpy
- python3-pandas
- python3-pkg-resources
- python3-presto
- python3-scipy
- python3-yaml
- python3
References
Summary
In this tutorial we learn how to install changeo
package on Kali Linux using different package management tools: apt
, apt-get
and aptitude
.