How To Install xtpcpp on Debian 11
Introduction
In this tutorial we learn how to install xtpcpp on Debian 11.
What is xtpcpp
xtpcpp is:
The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export
There are three methods to install xtpcpp on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install xtpcpp Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install xtpcpp using apt-get by running the following command:
sudo apt-get -y install xtpcpp
Install xtpcpp Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install xtpcpp using apt by running the following command:
sudo apt -y install xtpcpp
Install xtpcpp Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install xtpcpp using aptitude by running the following command:
sudo aptitude -y install xtpcpp
How To Uninstall xtpcpp on Debian 11
To uninstall only the xtpcpp package we can use the following command:
sudo apt-get remove xtpcpp
Uninstall xtpcpp And Its Dependencies
To uninstall xtpcpp and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove xtpcpp
Remove xtpcpp Configurations and Data
To remove xtpcpp configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge xtpcpp
Remove xtpcpp configuration, data, and all of its dependencies
We can use the following command to remove xtpcpp configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge xtpcpp
Dependencies
xtpcpp have the following dependencies:
- libc6
- libgcc-s1
- libodsstream0
- libpappsomspp-widget0
- libpappsomspp0
- libqcustomplot2.0
- libqt5core5a
- libqt5gui5
- libqt5network5
- libqt5printsupport5
- libqt5widgets5
- libqt5xml5
- libstdc++6
References
Summary
In this tutorial we learn how to install xtpcpp package on Debian 11 using different package management tools: apt, apt-get and aptitude.