How To Install virulencefinder-examples on Debian 11
Introduction
In this tutorial we learn how to install virulencefinder-examples
on Debian 11.
What is virulencefinder-examples
virulencefinder-examples is:
The VirulenceFinder service contains one Python script virulencefinder.py which is the script of the latest version of the VirulenceFinder service. VirulenceFinder identifies viruelnce genes in total or partial sequenced isolates of bacteria - at the moment only E. coli, Enterococcus, S. aureus and Listeria are available.
This package provides an example for virulencefinder including ecoli database.
There are three methods to install virulencefinder-examples
on Debian 11. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install virulencefinder-examples Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install virulencefinder-examples
using apt-get
by running the following command:
sudo apt-get -y install virulencefinder-examples
Install virulencefinder-examples Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install virulencefinder-examples
using apt
by running the following command:
sudo apt -y install virulencefinder-examples
Install virulencefinder-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install virulencefinder-examples
using aptitude
by running the following command:
sudo aptitude -y install virulencefinder-examples
How To Uninstall virulencefinder-examples on Debian 11
To uninstall only the virulencefinder-examples
package we can use the following command:
sudo apt-get remove virulencefinder-examples
Uninstall virulencefinder-examples And Its Dependencies
To uninstall virulencefinder-examples
and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove virulencefinder-examples
Remove virulencefinder-examples Configurations and Data
To remove virulencefinder-examples
configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge virulencefinder-examples
Remove virulencefinder-examples configuration, data, and all of its dependencies
We can use the following command to remove virulencefinder-examples
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge virulencefinder-examples
Dependencies
virulencefinder-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install virulencefinder-examples
package on Debian 11 using different package management tools: apt
, apt-get
and aptitude
.