How To Install umis-examples on Kali Linux

Introduction

In this tutorial we learn how to install umis-examples on Kali Linux.

What is umis-examples

umis-examples is:

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process.

1. Formatting reads
2. Filtering noisy cellular barcodes
3. Pseudo-mapping to cDNAs
4. Counting molecular identifiers

Example and test files for umis.

There are three methods to install umis-examples on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install umis-examples Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install umis-examples using apt-get by running the following command:

sudo apt-get -y install umis-examples

Install umis-examples Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install umis-examples using apt by running the following command:

sudo apt -y install umis-examples

Install umis-examples Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install umis-examples using aptitude by running the following command:

sudo aptitude -y install umis-examples

How To Uninstall umis-examples on Kali Linux

To uninstall only the umis-examples package we can use the following command:

sudo apt-get remove umis-examples

Uninstall umis-examples And Its Dependencies

To uninstall umis-examples and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove umis-examples

Remove umis-examples Configurations and Data

To remove umis-examples configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge umis-examples

Remove umis-examples configuration, data, and all of its dependencies

We can use the following command to remove umis-examples configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge umis-examples

Dependencies

umis-examples have the following dependencies:

References

• umis-examples website

Summary

In this tutorial we learn how to install umis-examples package on Kali Linux using different package management tools: apt, apt-get and aptitude.