How To Install umis-examples on Debian 12
Introduction
In this tutorial we learn how to install umis-examples on Debian 12.
What is umis-examples
umis-examples is:
Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.
There are four steps in this process.
- Formatting reads
- Filtering noisy cellular barcodes
- Pseudo-mapping to cDNAs
- Counting molecular identifiers
Example and test files for umis.
There are three methods to install umis-examples on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install umis-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install umis-examples using apt-get by running the following command:
sudo apt-get -y install umis-examples
Install umis-examples Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install umis-examples using apt by running the following command:
sudo apt -y install umis-examples
Install umis-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install umis-examples using aptitude by running the following command:
sudo aptitude -y install umis-examples
How To Uninstall umis-examples on Debian 12
To uninstall only the umis-examples package we can use the following command:
sudo apt-get remove umis-examples
Uninstall umis-examples And Its Dependencies
To uninstall umis-examples and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove umis-examples
Remove umis-examples Configurations and Data
To remove umis-examples configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge umis-examples
Remove umis-examples configuration, data, and all of its dependencies
We can use the following command to remove umis-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge umis-examples
Dependencies
umis-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install umis-examples package on Debian 12 using different package management tools: apt, apt-get and aptitude.
