How To Install trinityrnaseq-examples on Ubuntu 18.04
Introduction
In this tutorial we learn how to install trinityrnaseq-examples on Ubuntu 18.04.
What is trinityrnaseq-examples
trinityrnaseq-examples is:
Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.
This package contains testing & example files.
There are three methods to install trinityrnaseq-examples on Ubuntu 18.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install trinityrnaseq-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install trinityrnaseq-examples using apt-get by running the following command:
sudo apt-get -y install trinityrnaseq-examples
Install trinityrnaseq-examples Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install trinityrnaseq-examples using apt by running the following command:
sudo apt -y install trinityrnaseq-examples
Install trinityrnaseq-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install trinityrnaseq-examples using aptitude by running the following command:
sudo aptitude -y install trinityrnaseq-examples
How To Uninstall trinityrnaseq-examples on Ubuntu 18.04
To uninstall only the trinityrnaseq-examples package we can use the following command:
sudo apt-get remove trinityrnaseq-examples
Uninstall trinityrnaseq-examples And Its Dependencies
To uninstall trinityrnaseq-examples and its dependencies that are no longer needed by Ubuntu 18.04, we can use the command below:
sudo apt-get -y autoremove trinityrnaseq-examples
Remove trinityrnaseq-examples Configurations and Data
To remove trinityrnaseq-examples configuration and data from Ubuntu 18.04 we can use the following command:
sudo apt-get -y purge trinityrnaseq-examples
Remove trinityrnaseq-examples configuration, data, and all of its dependencies
We can use the following command to remove trinityrnaseq-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge trinityrnaseq-examples
References
Summary
In this tutorial we learn how to install trinityrnaseq-examples package on Ubuntu 18.04 using different package management tools: apt, apt-get and aptitude.
