How To Install trinityrnaseq-examples on Kali Linux

Introduction

In this tutorial we learn how to install trinityrnaseq-examples on Kali Linux.

What is trinityrnaseq-examples

trinityrnaseq-examples is:

Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.

This package contains testing & example files.

There are three methods to install trinityrnaseq-examples on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install trinityrnaseq-examples Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install trinityrnaseq-examples using apt-get by running the following command:

sudo apt-get -y install trinityrnaseq-examples

Install trinityrnaseq-examples Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install trinityrnaseq-examples using apt by running the following command:

sudo apt -y install trinityrnaseq-examples

Install trinityrnaseq-examples Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install trinityrnaseq-examples using aptitude by running the following command:

sudo aptitude -y install trinityrnaseq-examples

How To Uninstall trinityrnaseq-examples on Kali Linux

To uninstall only the trinityrnaseq-examples package we can use the following command:

sudo apt-get remove trinityrnaseq-examples

Uninstall trinityrnaseq-examples And Its Dependencies

To uninstall trinityrnaseq-examples and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove trinityrnaseq-examples

Remove trinityrnaseq-examples Configurations and Data

To remove trinityrnaseq-examples configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge trinityrnaseq-examples

Remove trinityrnaseq-examples configuration, data, and all of its dependencies

We can use the following command to remove trinityrnaseq-examples configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge trinityrnaseq-examples

Dependencies

trinityrnaseq-examples have the following dependencies:

• perl

References

• trinityrnaseq-examples website

Summary

In this tutorial we learn how to install trinityrnaseq-examples package on Kali Linux using different package management tools: apt, apt-get and aptitude.