How To Install trace2dbest on Debian 10
Introduction
In this tutorial we learn how to install trace2dbest on Debian 10.
What is trace2dbest
trace2dbest is:
ESTs are short sequences derived from reverse-transcribed RNA. Their abundances yield insights in the expression of genes across tissues, support the discovery of new genes and allow one to assess the coverage of whole genome sequencing projects. Public databases like dbEST at the NCBI collect this data.
trace2dbEST process raw sequenceing chromatograph trace files from EST projects into quality-checked sequences, ready for submission to dbEST. trace2dbEST guides you through the creation of all the necessary files for submission of ESTs to dbEST. trace2dbest makes use of other software (available free under academic licence) that you will need to have installed, namely phred, cross_match and (optionally) BLAST.
There are three methods to install trace2dbest on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install trace2dbest Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install trace2dbest using apt-get by running the following command:
sudo apt-get -y install trace2dbest
Install trace2dbest Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install trace2dbest using apt by running the following command:
sudo apt -y install trace2dbest
Install trace2dbest Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install trace2dbest using aptitude by running the following command:
sudo aptitude -y install trace2dbest
How To Uninstall trace2dbest on Debian 10
To uninstall only the trace2dbest package we can use the following command:
sudo apt-get remove trace2dbest
Uninstall trace2dbest And Its Dependencies
To uninstall trace2dbest and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove trace2dbest
Remove trace2dbest Configurations and Data
To remove trace2dbest configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge trace2dbest
Remove trace2dbest configuration, data, and all of its dependencies
We can use the following command to remove trace2dbest configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge trace2dbest
Dependencies
trace2dbest have the following dependencies:
References
Summary
In this tutorial we learn how to install trace2dbest package on Debian 10 using different package management tools: apt, apt-get and aptitude.