How To Install theseus-examples on Ubuntu 22.04
Introduction
In this tutorial we learn how to install theseus-examples
on Ubuntu 22.04.
What is theseus-examples
theseus-examples is:
Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.
When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.
This package contains usage examples for theseus.
There are three methods to install theseus-examples
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install theseus-examples Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install theseus-examples
using apt-get
by running the following command:
sudo apt-get -y install theseus-examples
Install theseus-examples Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install theseus-examples
using apt
by running the following command:
sudo apt -y install theseus-examples
Install theseus-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install theseus-examples
using aptitude
by running the following command:
sudo aptitude -y install theseus-examples
How To Uninstall theseus-examples on Ubuntu 22.04
To uninstall only the theseus-examples
package we can use the following command:
sudo apt-get remove theseus-examples
Uninstall theseus-examples And Its Dependencies
To uninstall theseus-examples
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove theseus-examples
Remove theseus-examples Configurations and Data
To remove theseus-examples
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge theseus-examples
Remove theseus-examples configuration, data, and all of its dependencies
We can use the following command to remove theseus-examples
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge theseus-examples
References
Summary
In this tutorial we learn how to install theseus-examples
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.