How To Install theseus-examples on Debian 12

Learn how to install theseus-examples on Debian 12 with this tutorial. theseus-examples is superimpose macromolecules using maximum likelihood (examples)

Introduction

In this tutorial we learn how to install theseus-examples on Debian 12.

What is theseus-examples

theseus-examples is:

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

This package contains usage examples for theseus.

There are three methods to install theseus-examples on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install theseus-examples Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install theseus-examples using apt-get by running the following command:

sudo apt-get -y install theseus-examples

Install theseus-examples Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install theseus-examples using apt by running the following command:

sudo apt -y install theseus-examples

Install theseus-examples Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install theseus-examples using aptitude by running the following command:

sudo aptitude -y install theseus-examples

How To Uninstall theseus-examples on Debian 12

To uninstall only the theseus-examples package we can use the following command:

sudo apt-get remove theseus-examples

Uninstall theseus-examples And Its Dependencies

To uninstall theseus-examples and its dependencies that are no longer needed by Debian 12, we can use the command below:

sudo apt-get -y autoremove theseus-examples

Remove theseus-examples Configurations and Data

To remove theseus-examples configuration and data from Debian 12 we can use the following command:

sudo apt-get -y purge theseus-examples

Remove theseus-examples configuration, data, and all of its dependencies

We can use the following command to remove theseus-examples configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge theseus-examples

Dependencies

theseus-examples have the following dependencies:

References

Summary

In this tutorial we learn how to install theseus-examples package on Debian 12 using different package management tools: apt, apt-get and aptitude.