How To Install surpyvor on Debian 12
Introduction
In this tutorial we learn how to install surpyvor on Debian 12.
What is surpyvor
surpyvor is:
SURVIVOR is a tool set for simulating/evaluating structural variations, merging and comparing SVs within and among samples, and includes various methods to reformat or summarize structural variations.
This package provides a Python wrapper to help with its integration in various Python-based workflows.
There are three methods to install surpyvor on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install surpyvor Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install surpyvor using apt-get by running the following command:
sudo apt-get -y install surpyvor
Install surpyvor Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install surpyvor using apt by running the following command:
sudo apt -y install surpyvor
Install surpyvor Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install surpyvor using aptitude by running the following command:
sudo aptitude -y install surpyvor
How To Uninstall surpyvor on Debian 12
To uninstall only the surpyvor package we can use the following command:
sudo apt-get remove surpyvor
Uninstall surpyvor And Its Dependencies
To uninstall surpyvor and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove surpyvor
Remove surpyvor Configurations and Data
To remove surpyvor configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge surpyvor
Remove surpyvor configuration, data, and all of its dependencies
We can use the following command to remove surpyvor configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge surpyvor
Dependencies
surpyvor have the following dependencies:
References
Summary
In this tutorial we learn how to install surpyvor package on Debian 12 using different package management tools: apt, apt-get and aptitude.
