How To Install subread-data on Debian 10
Introduction
In this tutorial we learn how to install subread-data on Debian 10.
What is subread-data
subread-data is:
This package provides data files from the original tarball:
- annotation: Directory including NCBI RefSeq gene annotations for genomes ‘hg19’, ‘mm10’ and ‘mm9’. Each row is an exon. Entrez gene identifiers and chromosomal coordinates are provided for each exon.
- test: Directory including test data and scripts.
There are three methods to install subread-data on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install subread-data Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install subread-data using apt-get by running the following command:
sudo apt-get -y install subread-data
Install subread-data Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install subread-data using apt by running the following command:
sudo apt -y install subread-data
Install subread-data Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install subread-data using aptitude by running the following command:
sudo aptitude -y install subread-data
How To Uninstall subread-data on Debian 10
To uninstall only the subread-data package we can use the following command:
sudo apt-get remove subread-data
Uninstall subread-data And Its Dependencies
To uninstall subread-data and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove subread-data
Remove subread-data Configurations and Data
To remove subread-data configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge subread-data
Remove subread-data configuration, data, and all of its dependencies
We can use the following command to remove subread-data configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge subread-data
Dependencies
subread-data have the following dependencies:
References
Summary
In this tutorial we learn how to install subread-data package on Debian 10 using different package management tools: apt, apt-get and aptitude.