How To Install staden-io-lib-utils on Ubuntu 20.04
Introduction
In this tutorial we learn how to install staden-io-lib-utils
on Ubuntu 20.04.
What is staden-io-lib-utils
staden-io-lib-utils is:
The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows.
This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format.
There are three methods to install staden-io-lib-utils
on Ubuntu 20.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install staden-io-lib-utils Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install staden-io-lib-utils
using apt-get
by running the following command:
sudo apt-get -y install staden-io-lib-utils
Install staden-io-lib-utils Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install staden-io-lib-utils
using apt
by running the following command:
sudo apt -y install staden-io-lib-utils
Install staden-io-lib-utils Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install staden-io-lib-utils
using aptitude
by running the following command:
sudo aptitude -y install staden-io-lib-utils
How To Uninstall staden-io-lib-utils on Ubuntu 20.04
To uninstall only the staden-io-lib-utils
package we can use the following command:
sudo apt-get remove staden-io-lib-utils
Uninstall staden-io-lib-utils And Its Dependencies
To uninstall staden-io-lib-utils
and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove staden-io-lib-utils
Remove staden-io-lib-utils Configurations and Data
To remove staden-io-lib-utils
configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge staden-io-lib-utils
Remove staden-io-lib-utils configuration, data, and all of its dependencies
We can use the following command to remove staden-io-lib-utils
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge staden-io-lib-utils
References
Summary
In this tutorial we learn how to install staden-io-lib-utils
package on Ubuntu 20.04 using different package management tools: apt
, apt-get
and aptitude
.