How To Install staden-io-lib-examples on Ubuntu 18.04
Introduction
In this tutorial we learn how to install staden-io-lib-examples on Ubuntu 18.04.
What is staden-io-lib-examples
staden-io-lib-examples is:
The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows.
This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format.
This package contains example data and a test suite to test the data.
There are three methods to install staden-io-lib-examples on Ubuntu 18.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install staden-io-lib-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install staden-io-lib-examples using apt-get by running the following command:
sudo apt-get -y install staden-io-lib-examples
Install staden-io-lib-examples Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install staden-io-lib-examples using apt by running the following command:
sudo apt -y install staden-io-lib-examples
Install staden-io-lib-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install staden-io-lib-examples using aptitude by running the following command:
sudo aptitude -y install staden-io-lib-examples
How To Uninstall staden-io-lib-examples on Ubuntu 18.04
To uninstall only the staden-io-lib-examples package we can use the following command:
sudo apt-get remove staden-io-lib-examples
Uninstall staden-io-lib-examples And Its Dependencies
To uninstall staden-io-lib-examples and its dependencies that are no longer needed by Ubuntu 18.04, we can use the command below:
sudo apt-get -y autoremove staden-io-lib-examples
Remove staden-io-lib-examples Configurations and Data
To remove staden-io-lib-examples configuration and data from Ubuntu 18.04 we can use the following command:
sudo apt-get -y purge staden-io-lib-examples
Remove staden-io-lib-examples configuration, data, and all of its dependencies
We can use the following command to remove staden-io-lib-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge staden-io-lib-examples
References
Summary
In this tutorial we learn how to install staden-io-lib-examples package on Ubuntu 18.04 using different package management tools: apt, apt-get and aptitude.
