How To Install ssm on CentOS 7
Introduction
In this tutorial we learn how to install ssm
on CentOS 7.
What is ssm
SSM is a macromolecular coordinate superposition library, written by Eugene Krissinel. The library implements the SSM algorithm of protein structure comparison in three dimensions, which includes an original procedure of matching graphs built on the protein’s secondary-structure elements, followed by an iterative three-dimensional alignment of protein backbone Calpha atoms. The algorithm implemented by the software is described in E. Krissinel & K. Henrick (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D Biol Crystallogr. 60, 2256-68. This package contains the shared library components needed for programs that have been compiled with the ssm library.
We can use yum
or dnf
to install ssm
on CentOS 7. In this tutorial we discuss both methods but you only need to choose one of method to install ssm.
Install ssm on CentOS 7 Using yum
Update yum database with yum
using the following command.
After updating yum database, We can install ssm
using yum
by running the following command:
Install ssm on CentOS 7 Using dnf
If you don’t have dnf installed you can install DNF on CentOS 7 first.
Update yum database with dnf
using the following command.
After updating yum database, We can install ssm
using dnf
by running the following command:
How To Uninstall ssm on CentOS 7
To uninstall only the ssm
package we can use the following command:
References
Summary
In this tutorial we learn how to install ssm
on CentOS 7 using yum
and dnf
.