How To Install spread-phy on Ubuntu 20.04
Introduction
In this tutorial we learn how to install spread-phy
on Ubuntu 20.04.
What is spread-phy
spread-phy is:
SPREAD is a user-friendly application to analyze and visualize phylogeographic reconstructions resulting from Bayesian inference of spatio-temporal diffusion.
There is a tutorial for SPREAD online at http://www.kuleuven.be/aidslab/phylogeography/tutorial/spread_tutorial.html
Originally this program is named “spread”. However, there is just such a package inside Debian and thus a ‘phy’ for phylogeny was prepended.
There are three methods to install spread-phy
on Ubuntu 20.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install spread-phy Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install spread-phy
using apt-get
by running the following command:
sudo apt-get -y install spread-phy
Install spread-phy Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install spread-phy
using apt
by running the following command:
sudo apt -y install spread-phy
Install spread-phy Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install spread-phy
using aptitude
by running the following command:
sudo aptitude -y install spread-phy
How To Uninstall spread-phy on Ubuntu 20.04
To uninstall only the spread-phy
package we can use the following command:
sudo apt-get remove spread-phy
Uninstall spread-phy And Its Dependencies
To uninstall spread-phy
and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove spread-phy
Remove spread-phy Configurations and Data
To remove spread-phy
configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge spread-phy
Remove spread-phy configuration, data, and all of its dependencies
We can use the following command to remove spread-phy
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge spread-phy
References
Summary
In this tutorial we learn how to install spread-phy
package on Ubuntu 20.04 using different package management tools: apt
, apt-get
and aptitude
.