How To Install sibelia-examples on Ubuntu 22.04
Introduction
In this tutorial we learn how to install sibelia-examples
on Ubuntu 22.04.
What is sibelia-examples
sibelia-examples is:
Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms.
Sibelia is useful in finding:
- shared regions,
- regions that present in one group of genomes but not in others,
- rearrangements that transform one genome to other genomes.
This package contains example data for sibelia.
There are three methods to install sibelia-examples
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install sibelia-examples Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install sibelia-examples
using apt-get
by running the following command:
sudo apt-get -y install sibelia-examples
Install sibelia-examples Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install sibelia-examples
using apt
by running the following command:
sudo apt -y install sibelia-examples
Install sibelia-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install sibelia-examples
using aptitude
by running the following command:
sudo aptitude -y install sibelia-examples
How To Uninstall sibelia-examples on Ubuntu 22.04
To uninstall only the sibelia-examples
package we can use the following command:
sudo apt-get remove sibelia-examples
Uninstall sibelia-examples And Its Dependencies
To uninstall sibelia-examples
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove sibelia-examples
Remove sibelia-examples Configurations and Data
To remove sibelia-examples
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge sibelia-examples
Remove sibelia-examples configuration, data, and all of its dependencies
We can use the following command to remove sibelia-examples
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge sibelia-examples
References
Summary
In this tutorial we learn how to install sibelia-examples
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.