How To Install shovill on Debian 11
Introduction
In this tutorial we learn how to install shovill on Debian 11.
What is shovill
shovill is:
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too.
There are three methods to install shovill on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install shovill Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install shovill using apt-get by running the following command:
sudo apt-get -y install shovill
Install shovill Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install shovill using apt by running the following command:
sudo apt -y install shovill
Install shovill Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install shovill using aptitude by running the following command:
sudo aptitude -y install shovill
How To Uninstall shovill on Debian 11
To uninstall only the shovill package we can use the following command:
sudo apt-get remove shovill
Uninstall shovill And Its Dependencies
To uninstall shovill and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove shovill
Remove shovill Configurations and Data
To remove shovill configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge shovill
Remove shovill configuration, data, and all of its dependencies
We can use the following command to remove shovill configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge shovill
Dependencies
shovill have the following dependencies:
References
Summary
In this tutorial we learn how to install shovill package on Debian 11 using different package management tools: apt, apt-get and aptitude.