How To Install seqan-raptor on Debian 12
Introduction
In this tutorial we learn how to install seqan-raptor on Debian 12.
What is seqan-raptor
seqan-raptor is:
Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.
There are three methods to install seqan-raptor on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install seqan-raptor Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install seqan-raptor using apt-get by running the following command:
sudo apt-get -y install seqan-raptor
Install seqan-raptor Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install seqan-raptor using apt by running the following command:
sudo apt -y install seqan-raptor
Install seqan-raptor Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install seqan-raptor using aptitude by running the following command:
sudo aptitude -y install seqan-raptor
How To Uninstall seqan-raptor on Debian 12
To uninstall only the seqan-raptor package we can use the following command:
sudo apt-get remove seqan-raptor
Uninstall seqan-raptor And Its Dependencies
To uninstall seqan-raptor and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove seqan-raptor
Remove seqan-raptor Configurations and Data
To remove seqan-raptor configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge seqan-raptor
Remove seqan-raptor configuration, data, and all of its dependencies
We can use the following command to remove seqan-raptor configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge seqan-raptor
Dependencies
seqan-raptor have the following dependencies:
References
Summary
In this tutorial we learn how to install seqan-raptor package on Debian 12 using different package management tools: apt, apt-get and aptitude.
