How To Install sepp on Debian 11
Introduction
In this tutorial we learn how to install sepp on Debian 11.
What is sepp
sepp is:
The tools SEPP and TIPP implementing these methods use ensembles of Hidden Markov Models (HMMs) in different ways, each focusing on a different problem.
SEPP stands for “SATe-enabled Phylogenetic Placement”, and addresses the problem of phylogenetic placement of short reads into reference alignments and trees.
TIPP stands for “Taxonomic Identification and Phylogenetic Profiling”, and addresses the problem of taxonomic identification and abundance profiling of metagenomic data.
There are three methods to install sepp on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install sepp Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install sepp using apt-get by running the following command:
sudo apt-get -y install sepp
Install sepp Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install sepp using apt by running the following command:
sudo apt -y install sepp
Install sepp Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install sepp using aptitude by running the following command:
sudo aptitude -y install sepp
How To Uninstall sepp on Debian 11
To uninstall only the sepp package we can use the following command:
sudo apt-get remove sepp
Uninstall sepp And Its Dependencies
To uninstall sepp and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove sepp
Remove sepp Configurations and Data
To remove sepp configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge sepp
Remove sepp configuration, data, and all of its dependencies
We can use the following command to remove sepp configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge sepp
Dependencies
sepp have the following dependencies:
References
Summary
In this tutorial we learn how to install sepp package on Debian 11 using different package management tools: apt, apt-get and aptitude.