How To Install scoary on Kali Linux

In this tutorial we learn how to install scoary on Kali Linux. scoary is pangenome-wide association studies

Introduction

In this tutorial we learn how to install scoary on Kali Linux.

What is scoary

scoary is:

Scoary is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the associations between all genes in the accessory genome and the traits. It reports a list of genes sorted by strength of association per trait.

There are three methods to install scoary on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install scoary Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install scoary using apt-get by running the following command:

sudo apt-get -y install scoary

Install scoary Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install scoary using apt by running the following command:

sudo apt -y install scoary

Install scoary Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install scoary using aptitude by running the following command:

sudo aptitude -y install scoary

How To Uninstall scoary on Kali Linux

To uninstall only the scoary package we can use the following command:

sudo apt-get remove scoary

Uninstall scoary And Its Dependencies

To uninstall scoary and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove scoary

Remove scoary Configurations and Data

To remove scoary configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge scoary

Remove scoary configuration, data, and all of its dependencies

We can use the following command to remove scoary configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge scoary

Dependencies

scoary have the following dependencies:

References

Summary

In this tutorial we learn how to install scoary package on Kali Linux using different package management tools: apt, apt-get and aptitude.