How To Install scoary on Debian 10
Introduction
In this tutorial we learn how to install scoary on Debian 10.
What is scoary
scoary is:
Scoary is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the associations between all genes in the accessory genome and the traits. It reports a list of genes sorted by strength of association per trait.
There are three methods to install scoary on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install scoary Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install scoary using apt-get by running the following command:
sudo apt-get -y install scoary
Install scoary Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install scoary using apt by running the following command:
sudo apt -y install scoary
Install scoary Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install scoary using aptitude by running the following command:
sudo aptitude -y install scoary
How To Uninstall scoary on Debian 10
To uninstall only the scoary package we can use the following command:
sudo apt-get remove scoary
Uninstall scoary And Its Dependencies
To uninstall scoary and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove scoary
Remove scoary Configurations and Data
To remove scoary configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge scoary
Remove scoary configuration, data, and all of its dependencies
We can use the following command to remove scoary configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge scoary
Dependencies
scoary have the following dependencies:
References
Summary
In this tutorial we learn how to install scoary package on Debian 10 using different package management tools: apt, apt-get and aptitude.