How To Install resfinder on Debian 12
Introduction
In this tutorial we learn how to install resfinder on Debian 12.
What is resfinder
resfinder is:
ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.
ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.
There are three methods to install resfinder on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install resfinder Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install resfinder using apt-get by running the following command:
sudo apt-get -y install resfinder
Install resfinder Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install resfinder using apt by running the following command:
sudo apt -y install resfinder
Install resfinder Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install resfinder using aptitude by running the following command:
sudo aptitude -y install resfinder
How To Uninstall resfinder on Debian 12
To uninstall only the resfinder package we can use the following command:
sudo apt-get remove resfinder
Uninstall resfinder And Its Dependencies
To uninstall resfinder and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove resfinder
Remove resfinder Configurations and Data
To remove resfinder configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge resfinder
Remove resfinder configuration, data, and all of its dependencies
We can use the following command to remove resfinder configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge resfinder
Dependencies
resfinder have the following dependencies:
References
Summary
In this tutorial we learn how to install resfinder package on Debian 12 using different package management tools: apt, apt-get and aptitude.
