How To Install readucks on Ubuntu 22.04
Introduction
In this tutorial we learn how to install readucks
on Ubuntu 22.04.
What is readucks
readucks is:
This package is inspired by the demultiplexing options in porechop but without the adapter trimming options - it just demuxes. It uses the parasail library with its Python bindings to do pairwise alignment which provides a considerable speed up over the seqan library used by porechop due to its low-level use of vector processor instructions.
There are three methods to install readucks
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install readucks Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install readucks
using apt-get
by running the following command:
sudo apt-get -y install readucks
Install readucks Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install readucks
using apt
by running the following command:
sudo apt -y install readucks
Install readucks Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install readucks
using aptitude
by running the following command:
sudo aptitude -y install readucks
How To Uninstall readucks on Ubuntu 22.04
To uninstall only the readucks
package we can use the following command:
sudo apt-get remove readucks
Uninstall readucks And Its Dependencies
To uninstall readucks
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove readucks
Remove readucks Configurations and Data
To remove readucks
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge readucks
Remove readucks configuration, data, and all of its dependencies
We can use the following command to remove readucks
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge readucks
References
Summary
In this tutorial we learn how to install readucks
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.