How To Install rdp-classifier-doc on Ubuntu 18.04
Introduction
In this tutorial we learn how to install rdp-classifier-doc on Ubuntu 18.04.
What is rdp-classifier-doc
rdp-classifier-doc is:
The RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic placement based on rRNA sequence data. The RDP Classifier can rapidly and accurately classify bacterial and archaeal 16s rRNA sequences, and Fungal LSU sequences. It provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. The RDP Classifier likely can be adapted to additional phylogenetically coherent bacterial taxonomies.
This package contains the JavaDoc generated HTML and examples for rdp-classifier.
There are three methods to install rdp-classifier-doc on Ubuntu 18.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install rdp-classifier-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install rdp-classifier-doc using apt-get by running the following command:
sudo apt-get -y install rdp-classifier-doc
Install rdp-classifier-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install rdp-classifier-doc using apt by running the following command:
sudo apt -y install rdp-classifier-doc
Install rdp-classifier-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install rdp-classifier-doc using aptitude by running the following command:
sudo aptitude -y install rdp-classifier-doc
How To Uninstall rdp-classifier-doc on Ubuntu 18.04
To uninstall only the rdp-classifier-doc package we can use the following command:
sudo apt-get remove rdp-classifier-doc
Uninstall rdp-classifier-doc And Its Dependencies
To uninstall rdp-classifier-doc and its dependencies that are no longer needed by Ubuntu 18.04, we can use the command below:
sudo apt-get -y autoremove rdp-classifier-doc
Remove rdp-classifier-doc Configurations and Data
To remove rdp-classifier-doc configuration and data from Ubuntu 18.04 we can use the following command:
sudo apt-get -y purge rdp-classifier-doc
Remove rdp-classifier-doc configuration, data, and all of its dependencies
We can use the following command to remove rdp-classifier-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge rdp-classifier-doc
References
Summary
In this tutorial we learn how to install rdp-classifier-doc package on Ubuntu 18.04 using different package management tools: apt, apt-get and aptitude.
