How To Install rate4site on Ubuntu 22.04
Introduction
In this tutorial we learn how to install rate4site
on Ubuntu 22.04.
What is rate4site
rate4site is:
Rate4Site calculates the relative evolutionary rate at each site using a probabilistic-based evolutionary model. This allows taking into account the stochastic process underlying sequence evolution within protein families and the phylogenetic tree of the proteins in the family. The conservation score at a site corresponds to the site’s evolutionary rate.
There are three methods to install rate4site
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install rate4site Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install rate4site
using apt-get
by running the following command:
sudo apt-get -y install rate4site
Install rate4site Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install rate4site
using apt
by running the following command:
sudo apt -y install rate4site
Install rate4site Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install rate4site
using aptitude
by running the following command:
sudo aptitude -y install rate4site
How To Uninstall rate4site on Ubuntu 22.04
To uninstall only the rate4site
package we can use the following command:
sudo apt-get remove rate4site
Uninstall rate4site And Its Dependencies
To uninstall rate4site
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove rate4site
Remove rate4site Configurations and Data
To remove rate4site
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge rate4site
Remove rate4site configuration, data, and all of its dependencies
We can use the following command to remove rate4site
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge rate4site
References
Summary
In this tutorial we learn how to install rate4site
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.