How To Install r-other-ascat on Kali Linux

In this tutorial we learn how to install r-other-ascat on Kali Linux. r-other-ascat is Allele-Specific Copy Number Analysis of Tumours

Introduction

In this tutorial we learn how to install r-other-ascat on Kali Linux.

What is r-other-ascat

r-other-ascat is:

ASCAT (allele-specific copy number analysis of tumors) is a allele- specific copy number analysis of the in vivo breast cancer genome. It can be used to accurately dissect the allele-specific copy number of solid tumors, simultaneously estimating and adjusting for both tumor ploidy and nonaberrant cell admixture.

There are three methods to install r-other-ascat on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-other-ascat Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-other-ascat using apt-get by running the following command:

sudo apt-get -y install r-other-ascat

Install r-other-ascat Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-other-ascat using apt by running the following command:

sudo apt -y install r-other-ascat

Install r-other-ascat Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-other-ascat using aptitude by running the following command:

sudo aptitude -y install r-other-ascat

How To Uninstall r-other-ascat on Kali Linux

To uninstall only the r-other-ascat package we can use the following command:

sudo apt-get remove r-other-ascat

Uninstall r-other-ascat And Its Dependencies

To uninstall r-other-ascat and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-other-ascat

Remove r-other-ascat Configurations and Data

To remove r-other-ascat configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-other-ascat

Remove r-other-ascat configuration, data, and all of its dependencies

We can use the following command to remove r-other-ascat configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-other-ascat

Dependencies

r-other-ascat have the following dependencies:

References

Summary

In this tutorial we learn how to install r-other-ascat package on Kali Linux using different package management tools: apt, apt-get and aptitude.