How To Install r-other-ascat on Debian 12
Introduction
In this tutorial we learn how to install r-other-ascat on Debian 12.
What is r-other-ascat
r-other-ascat is:
ASCAT (allele-specific copy number analysis of tumors) is a allele- specific copy number analysis of the in vivo breast cancer genome. It can be used to accurately dissect the allele-specific copy number of solid tumors, simultaneously estimating and adjusting for both tumor ploidy and nonaberrant cell admixture.
There are three methods to install r-other-ascat on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-other-ascat Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-other-ascat using apt-get by running the following command:
sudo apt-get -y install r-other-ascat
Install r-other-ascat Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-other-ascat using apt by running the following command:
sudo apt -y install r-other-ascat
Install r-other-ascat Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-other-ascat using aptitude by running the following command:
sudo aptitude -y install r-other-ascat
How To Uninstall r-other-ascat on Debian 12
To uninstall only the r-other-ascat package we can use the following command:
sudo apt-get remove r-other-ascat
Uninstall r-other-ascat And Its Dependencies
To uninstall r-other-ascat and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-other-ascat
Remove r-other-ascat Configurations and Data
To remove r-other-ascat configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-other-ascat
Remove r-other-ascat configuration, data, and all of its dependencies
We can use the following command to remove r-other-ascat configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-other-ascat
Dependencies
r-other-ascat have the following dependencies:
- r-base-core
- r-api-4.0
- r-cran-rcolorbrewer
- r-cran-data.table
- r-bioc-genomicranges
- r-bioc-iranges
- r-cran-doparallel
- r-cran-foreach
References
Summary
In this tutorial we learn how to install r-other-ascat package on Debian 12 using different package management tools: apt, apt-get and aptitude.
