How To Install r-cran-wgcna on Debian 12
Introduction
In this tutorial we learn how to install r-cran-wgcna on Debian 12.
What is r-cran-wgcna
r-cran-wgcna is:
Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) doi:10.2202/1544-6115.1128 and Langfelder and Horvath (2008) doi:10.1186/1471-2105-9-559. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
There are three methods to install r-cran-wgcna on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-wgcna Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-wgcna using apt-get by running the following command:
sudo apt-get -y install r-cran-wgcna
Install r-cran-wgcna Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-wgcna using apt by running the following command:
sudo apt -y install r-cran-wgcna
Install r-cran-wgcna Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-wgcna using aptitude by running the following command:
sudo aptitude -y install r-cran-wgcna
How To Uninstall r-cran-wgcna on Debian 12
To uninstall only the r-cran-wgcna package we can use the following command:
sudo apt-get remove r-cran-wgcna
Uninstall r-cran-wgcna And Its Dependencies
To uninstall r-cran-wgcna and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-cran-wgcna
Remove r-cran-wgcna Configurations and Data
To remove r-cran-wgcna configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-cran-wgcna
Remove r-cran-wgcna configuration, data, and all of its dependencies
We can use the following command to remove r-cran-wgcna configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-wgcna
Dependencies
r-cran-wgcna have the following dependencies:
- r-base-core
- r-api-4.0
- r-cran-dynamictreecut
- r-cran-fastcluster
- r-cran-matrixstats
- r-cran-hmisc
- r-bioc-impute
- r-cran-foreach
- r-cran-doparallel
- r-bioc-preprocesscore
- r-cran-survival
- r-bioc-go.db
- r-bioc-annotationdbi
- r-cran-rcpp
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-cran-wgcna package on Debian 12 using different package management tools: apt, apt-get and aptitude.
