How To Install r-cran-webgestaltr on Ubuntu 20.04
Introduction
In this tutorial we learn how to install r-cran-webgestaltr
on Ubuntu 20.04.
What is r-cran-webgestaltr
r-cran-webgestaltr is:
The web version WebGestalt http://www.webgestalt.org supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.
There are three methods to install r-cran-webgestaltr
on Ubuntu 20.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-cran-webgestaltr Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-webgestaltr
using apt-get
by running the following command:
sudo apt-get -y install r-cran-webgestaltr
Install r-cran-webgestaltr Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-cran-webgestaltr
using apt
by running the following command:
sudo apt -y install r-cran-webgestaltr
Install r-cran-webgestaltr Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-webgestaltr
using aptitude
by running the following command:
sudo aptitude -y install r-cran-webgestaltr
How To Uninstall r-cran-webgestaltr on Ubuntu 20.04
To uninstall only the r-cran-webgestaltr
package we can use the following command:
sudo apt-get remove r-cran-webgestaltr
Uninstall r-cran-webgestaltr And Its Dependencies
To uninstall r-cran-webgestaltr
and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove r-cran-webgestaltr
Remove r-cran-webgestaltr Configurations and Data
To remove r-cran-webgestaltr
configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge r-cran-webgestaltr
Remove r-cran-webgestaltr configuration, data, and all of its dependencies
We can use the following command to remove r-cran-webgestaltr
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-webgestaltr
References
Summary
In this tutorial we learn how to install r-cran-webgestaltr
package on Ubuntu 20.04 using different package management tools: apt
, apt-get
and aptitude
.