How To Install r-cran-webgestaltr on Kali Linux

In this tutorial we learn how to install r-cran-webgestaltr on Kali Linux. r-cran-webgestaltr is find over-represented properties in gene lists

Introduction

In this tutorial we learn how to install r-cran-webgestaltr on Kali Linux.

What is r-cran-webgestaltr

r-cran-webgestaltr is:

The web version WebGestalt http://www.webgestalt.org supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.

There are three methods to install r-cran-webgestaltr on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-cran-webgestaltr Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-cran-webgestaltr using apt-get by running the following command:

sudo apt-get -y install r-cran-webgestaltr

Install r-cran-webgestaltr Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-cran-webgestaltr using apt by running the following command:

sudo apt -y install r-cran-webgestaltr

Install r-cran-webgestaltr Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-cran-webgestaltr using aptitude by running the following command:

sudo aptitude -y install r-cran-webgestaltr

How To Uninstall r-cran-webgestaltr on Kali Linux

To uninstall only the r-cran-webgestaltr package we can use the following command:

sudo apt-get remove r-cran-webgestaltr

Uninstall r-cran-webgestaltr And Its Dependencies

To uninstall r-cran-webgestaltr and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-cran-webgestaltr

Remove r-cran-webgestaltr Configurations and Data

To remove r-cran-webgestaltr configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-cran-webgestaltr

Remove r-cran-webgestaltr configuration, data, and all of its dependencies

We can use the following command to remove r-cran-webgestaltr configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-cran-webgestaltr

Dependencies

r-cran-webgestaltr have the following dependencies:

References

Summary

In this tutorial we learn how to install r-cran-webgestaltr package on Kali Linux using different package management tools: apt, apt-get and aptitude.